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Brent Pedersen's Projects

spacepile icon spacepile

convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.

sveval icon sveval

run multiple sv evalution tools

svpack icon svpack

Structural variant (SV) analysis tools

svtools icon svtools

Tools for processing and analyzing structural variants.

svtyper icon svtyper

Bayesian genotyper for structural variants

tiwih icon tiwih

simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.

tnsv icon tnsv

add true-negative SVs from a population callset to a truth-set.

totable icon totable

simple python / cython wrapper to tokyo cabinet tables

v8rustruct icon v8rustruct

broken example of rust <=> js so I can get help

vbyte-zig icon vbyte-zig

vbyte compression for zig using https://github.com/cruppstahl/libvbyte

vcfanno icon vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files

vcfassoc icon vcfassoc

perform genotype-phenotype-association tests on a VCF with logistic regression.

vcfgo icon vcfgo

a golang library to read, write and manipulate files in the variant call format.

xopen icon xopen

open files for buffered reading and writing in #golang

zip icon zip

Wrapper for the zip library

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