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nimpress

Polygenic score calculation from VCF in Nim.

nlvm

LLVM-based compiler for the Nim language

oodles

oodles of bioinformatics tools

packages

List of packages for Nimble

paragraph

Graph realignment tools for structural variants

pbr

drunk on perbase pileups and lua expressions

peddy

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

pedfile

pedigree file parsing and relatedness calculations for nim

perbase

Per-base per-nucleotide depth analysis

polars-learn

learn rust polars

poretools

a toolkit for working with Oxford nanopore data

poverlap

significance testing over interval overlaps

power

primer

Primer is a Flash-like API built on top of Canvas using jQuery. (this fork aims to improve speed and make it easier to attach events to objects).

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pybloomfaster

fast bloomfilter

pyfaidx

"samtools faidx" compatible FASTA indexing in pure python

pyfasta

fast, memory-efficient, pythonic (and command-line) access to fasta sequence files

pyfastx

unified access to fasta, fastx using kseq.h + ??

python-giggle

python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.

quicksect

a cythonized, extended version of the interval search tree in bx

rare-disease-wf

(WIP) best-practices workflow for rare disease

recipes

Conda recipes for the bioconda channel.

roaring

rstuff

R stuff I wrote

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

rusty_v8

Rust bindings for the V8 JavaScript engine

samplot

Plot structural variant signals from many BAMs and CRAMs

samtools

seqcover

seqcover allows users to view coverage for hundreds of genes and dozens of samples