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BHKLAB's Projects

affymetrix_cnv_pipeline icon affymetrix_cnv_pipeline

Snakemake pipeline for calling CNAs from Affymetrix (now Thermofisher) Cytoscan and Oncoscan arrays

annotationgx icon annotationgx

An R package to query various bio/chem-informatics databases APIs to construct annotation files.

azure-aks-snakemake icon azure-aks-snakemake

Managed Azure Kubernetes Service (AKS) cluster for deploying Snakemake jobs with dynamic resource allocation and scaling.

bioc2020workshop icon bioc2020workshop

A workshop on using high throughput screening experiments in the realm of biomarker discovery.

bioc2022workshop icon bioc2022workshop

A workshop on drug combination experiment support in CoreGx and PharmacoGx.

cdrug icon cdrug

Inconsistency in large pharmacogenomic studies

cdrug-rebuttal icon cdrug-rebuttal

Code for "Assessment of pharmacogenomic agreement" by Safikhani et al -> Response to "Pharmacogenomic agreement between two cancer cell line data sets" by the GDSC/CCLE investigators

cdrug-rebuttals icon cdrug-rebuttals

Analysis pipeline implementing the response to the rebuttal letters in Nature

cdrug2 icon cdrug2

Code for "Revisiting Inconsistency in Large Pharmacogenomic Studies"

cfi402257 icon cfi402257

Delay of mitotic progression caused by impairment of the anaphase-promoting complex confers resistance to TTK inhibitors in triple-negative breast cancer

clinsets icon clinsets

R Data Package for clinical multimodal data

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