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disv-hpv16's Introduction

DisV-HPV16

discover HPV16 infection and its oncogenes expression This is the first version of our software, we will make better in the future This software writed in BASH, this may be very easy. Integration of Hisat2, StringTie and samtools. The result will appear under the running path If problems arise in running, You can split commands and run them separately

disv-hpv16's People

Contributors

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Forkers

entcai ipstone

disv-hpv16's Issues

Errors, humangenome does not exist/HPV16wholegenome does not exist

Hello, I would like to use your program for my paired RNA reads.

I tried:
DisV-HPV16.sh sequence_1.fastq sequence_2.fastq

I get error messages like humangenome does not exist, HPV16wholegenome does not exist.

How do I specify these files in the command? I have hg19.fa and downloaded your HPV16.rar that has HPV16whole.gtf

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