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biobloom

Create Bloom filters for a given reference and then use it to categorize sequences

cb_sniffer

mutation(barcode) caller for 10x single cell data

cite-seq-count

A tool that allows to get UMI counts from a single cell protein assay

ctat_humanfusionlib

data repo for fusions found in human genomes and transcriptomes

disv-hpv16

discover HPV16 infection and its oncogenes expression

immune_cells_analysis

immuneresistance

This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".

neofusion

screpertoire

A toolkit for single-cell immune profiling

scrna_mutations

Supplementary data for Petti, et al 2019 scRNA mutation publication

single-cell-3prime-snp-clustering

singlet

Single cell RNA Seq data analysis with quantitative phenotypes

star

RNA-seq aligner

star-fusion

STAR-Fusion codebase

subset-bam

tcellmatch

virtect

Detection of viruses from RNA-Seq on human samples