This repository is intended to contain utilities facilitating processing and analysis of sequence data derived from the indrop single cell encapsulation platform.
Thus far there are the following files:
- indrops_pipeline_tutorial.rmd: Beginners guide to running the analysis pipeline (in RMarkDown, even though the code is almost all bash)
- indrops_pipeline_tutorial.html: Beginners guide to running the analysis pipeline (knitted HTML format)
- util.r: Some utilities for downstream analysis of counts produced from the indrops pipeline (to date, only a single function for creating diagnostic plot useful for picking counts cut off to define "cells")
- Eric J. Kort
This project is licensed under the MIT License - see the LICENSE.md file for details