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adgroupmanager

command line management of groups using python. list,add,remove users from AD groups

admin-tools

Various scripts used to monitor the HPC environment.

aperioparser

parse aperio metadata to JSON

arrayqclinuxcmdline

Perform array qc on linux cmd line - used to be windows-only

aws-cptac-sync

Data transformation and integration service between CPTAC BCR and CDR.

aws-restore

awsRestore is a python script that runs on the command line for restoring entire folders and subfolders stored in AWS Glacier Deep Archive.

awshpccompute

compute nodes on hpc

bashscript

Template for well structured base script

bifurcator

bifurcatoR package

biscuit_snakemake_workflow

Snakemake Workflow For Running Biscuit https://github.com/huishenlab/biscuit

cardiocyte

R Package for analyzing time series data related to cardiomyocyte physiology.

cbioportalproject

from-scratch cBioPortal project for use with Rstudio[.cloud]

centos-dockerfiles

Dockerfiles for various common implementations

chat_paper

Supporting information for human ChAT CD4+ paper

cloudfront-authorization-at-edge

Protect downloads of your content hosted on CloudFront with Cognito authentication using cookies and Lambda@Edge

clusterdash

a dashboard for PBS cluster stats

cycling

Analysis for Milliron, et al.

dolambda

AWS Lambda as a backend for R's doParallel / foreach toolchain.

expdesign2021

A package to ensure that all dependencies are installed for Experimental Design & Biostats practical sessions. Scroll down to the README for installation details.

gdal-vsi

GDAL is an open source X/MIT licensed translator library for raster and vector geospatial data formats.

genomicsawslims

genomicscorefilemgmt

tools to manage the VAI genomics core file lifecycle

ggpubr

'ggplot2' Based Publication Ready Plots

globus-connect-server-deploy

Deployment tools for Globus Connect Server

gpfsgui

gui for gpfs mgmt

gpu-burn

Multi-GPU CUDA stress test

graphing-tools

a set of graphing tools using Google Charts, for trends such as storage costs over time

graylog-docker-compose

A set of Docker Compose files that allow you to quickly spin up a Graylog instance for testing or demo purposes.

guacamole-install-rhel-7

Apache Guacamole installation bash script for RHEL 7 and CentOS 7 including options for Nginx, HTTPS, SSL, LDAP, Let's Encrypt certificates and more

indrop_util

Some documentation and code snippets to help process sequencing data from the indrop platform