Topic: structural-biology Goto Github
Some thing interesting about structural-biology
Some thing interesting about structural-biology
structural-biology,Cython implementation of PDB -> DataFrame parsing
User: a-r-j
structural-biology,Protein Graph Library
User: a-r-j
Home Page: https://graphein.ai/
structural-biology,This repo is dedicated to make bioinformatics resources available for anyone who wish to enter this field. (You may find it useful or not useful based on your level). I am still embarking my path in the field, just posting things based on my knowledge and the things which worked for me personally, they may/may not work with you, totally fine.
User: ahhmedsamehh
structural-biology,The Biochemical Algorithms Library
Organization: ball-project
structural-biology,BioEn - Bayesian Inference Of ENsembles
Organization: bio-phys
structural-biology,A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Organization: biojulia
structural-biology,A comprehensive library for computational molecular biology
Organization: biotite-dev
Home Page: https://www.biotite-python.org
structural-biology,Toolbox for molecular animations in Blender, powered by Geometry Nodes.
User: bradyajohnston
Home Page: https://bradyajohnston.github.io/MolecularNodes/
structural-biology,This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202
User: carlocamilloni
structural-biology,PyMOL extension to color AlphaFold structures by confidence (pLDDT).
User: cbalbin-bio
structural-biology,A framework for rapidly mining structural information from the Protein Data Bank
Organization: chopralab
structural-biology,Pytorch implementation of BionoiNet, which is a deep learning-based software to classify ligand-binding sites.
Organization: csbg-lsu
structural-biology,Control PyMOL sessions via IPython
User: cxhernandez
structural-biology,An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
Organization: deeprank
Home Page: https://deeprank2.readthedocs.io/en/latest/?badge=latest
structural-biology,PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
Organization: drorlab
structural-biology,FreeSASA Python Module
Organization: freesasa
structural-biology,TISIGNER: Unleash the power of synthetic biology
Organization: gardner-binflab
Home Page: https://tisigner.com
structural-biology,Protein-Protein Docking using Genetic Algorithm
Organization: gdocking
structural-biology,Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
Organization: genentech
Home Page: https://www.biorxiv.org/content/10.1101/2022.10.07.511322v1
structural-biology,mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
User: gph82
Home Page: http://proteinformatics.org/mdciao
structural-biology,Set of useful HADDOCK utility scripts
Organization: haddocking
structural-biology,Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
Organization: haddocking
Home Page: https://www.bonvinlab.org
structural-biology,A dependency-free cross-platform swiss army knife for PDB files.
Organization: haddocking
Home Page: https://haddocking.github.io/pdb-tools/
structural-biology,Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
Organization: i2pc
Home Page: http://scipion.i2pc.es
structural-biology,Intelligent System for Analysis, Model Building And Rational Design of biomolecules.
Organization: isambard-uob
Home Page: https://isambard-uob.github.io/isambard/
structural-biology,A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
User: jgreener64
structural-biology,Predicting protein structure through sequence modeling
User: jonathanking
structural-biology,An all-atom protein structure dataset for machine learning.
User: jonathanking
structural-biology,TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
Organization: kudryashevlab
Home Page: https://github.com/KudryashevLab/TomoBEAR/wiki
structural-biology,RiboNucleic Acid (RNA) Language Model
Organization: lbcb-sci
Home Page: https://sikic-lab.github.io/
structural-biology,ResPRE is an algorithm for protein residue-residue contact-map prediction
User: leeyang
Home Page: https://zhanglab.ccmb.med.umich.edu/ResPRE/
structural-biology,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
structural-biology,C-library for calculating Solvent Accessible Surface Areas
User: mittinatten
Home Page: http://freesasa.github.io/
structural-biology,VSCode Extension for interactively visualising protein structure data in the editor
Organization: molstar
structural-biology,PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
Organization: mpi-dortmund
structural-biology,Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
User: ostrokach
Home Page: http://proteinsolver.org
structural-biology,A curated list of awesome computational cryo-EM methods.
User: phonchi
structural-biology,A curated list of awesome computational cryo-ET methods.
User: phonchi
structural-biology,PACKMAN: PACKing and Motion ANalysis
User: pranavkhade
structural-biology,macromolecular crystallography library and utilities
Organization: project-gemmi
Home Page: https://project-gemmi.github.io/
structural-biology,The MPI Bioinformatics Toolkit
Organization: proteinevolution
Home Page: https://toolkit.tuebingen.mpg.de
structural-biology,Various integrations to the Schrodinger ecosystem. With major interest on analysis tools for Molecular Dynamics simulations run with Desmond.
User: rebelot
structural-biology,The Integrative Modeling Platform
Organization: salilab
Home Page: https://integrativemodeling.org
structural-biology,Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
User: samirelanduk
Home Page: https://atomium.bio
structural-biology,The database and API backend for ZincBind - the database of zinc binding sites
User: samirelanduk
Home Page: https://api.zincbind.bioinf.org.uk
structural-biology,A Python framework for structural systems biology
Organization: sbrg
Home Page: http://ssbio.readthedocs.io/en/latest/
structural-biology,Read and write files and manipulate data in the MRC2014 format
User: sethaxen
structural-biology,DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
Organization: wells-wood-research
Home Page: http://destressprotein.design
structural-biology,Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
Organization: zaugggroup
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