Topic: microbial-communities Goto Github
Some thing interesting about microbial-communities
Some thing interesting about microbial-communities
microbial-communities,GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".
User: areias03
microbial-communities,FLYCOP (FLexible sYnthetic Consortium OPtimization)
User: beatrizgj
microbial-communities,Benbow Lab at Michigan State University, Tutorials/example data for analysis of: 16S data, VCF files
Organization: benbowlab
Home Page: https://benbowlab.github.io/
microbial-communities,Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/melonnpan
microbial-communities,This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.
User: biomathsys
microbial-communities,A general 16S rDNA sequencing analysis pipeline
User: biosina
microbial-communities,Metabolic Engineering Workbench
Organization: biosystemsum
Home Page: https://mewpy.readthedocs.io
microbial-communities,Supplementary data for co-occurrence manuscript
User: cdanielmachado
microbial-communities,Designing microbial communities
User: cdanielmachado
microbial-communities,Higher-Order Co-occurrence
User: cdanielmachado
microbial-communities,Supplementary Material for Blasche et al
User: cdanielmachado
microbial-communities,SMETANA: a tool to analyse interactions in microbial communities
User: cdanielmachado
microbial-communities,Reproduce the figures in "The genetic basis for adaptation of model-designed syntrophic co-cultures"
User: coltonlloyd
microbial-communities,My personal research website
User: danielsprockett
Home Page: https://danielsprockett.github.io/
microbial-communities,Easy-to-use tool facilitating work with Mothur.
User: dizak
Home Page: https://dizak.github.io/mothulity
microbial-communities,Structured Queries and analyses used with MetamapsDB
User: etheleon
microbial-communities,StrainIQ is an n-gram based method to identify and quantify microbial communities in metagenomics samples.
User: gudalab
microbial-communities,Chemical metrics for microbial communities
User: jedick
Home Page: https://chnosz.net/chem16S
microbial-communities,Environmental metagenomics, Spring 2022, Physalia Courses
User: karkman
microbial-communities,Environmental metagenomics, Spring 2023, Physalia Courses
User: karkman
microbial-communities,Environmental metagenomics, Spring 2021, Physalia Courses
User: karkman
microbial-communities,a versatile approach to integrate heterogeneous datasets
User: lauzingaretti
microbial-communities,Functions to manipulate and visualize microbial community data
Organization: lebeerlab
Home Page: https://lebeerlab.github.io/tidytacos/
microbial-communities,Scripts for a manuscript titled "Subsurface Microbial Communities Reflect Regional-Scale Groundwater Hydraulic Connectivity" (submitted)
Organization: llnl
microbial-communities,The is mostly a wrapper tool using phyloseq and microbiome R packages.
User: microsud
Home Page: https://microsud.github.io/microbiomeutilities/
microbial-communities,A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
User: microsud
Home Page: https://microsud.github.io/Tools-Microbiome-Analysis/
microbial-communities,NOTE: The iroki command line tool is no longer maintained. Please see: https://github.com/mooreryan/iroki
User: mooreryan
microbial-communities,Data and code for Kimbell et al., 2021
User: newtonlabuwm
microbial-communities,Data and code for LaMartina et al., 2021
User: newtonlabuwm
microbial-communities,RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.
User: oschakoory
Home Page: https://academic.oup.com/nargab/article/4/3/lqac070/6708509
microbial-communities,COMMIT: Community-dependent gap-filling considering metabolite leakage
User: pwendering
microbial-communities,Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
User: rcolpo
Home Page: https://pgprec.bioinf.uni-leipzig.de/
microbial-communities,Various functions for analysis of microbial community data
User: russel88
microbial-communities,3D Analysis of confocal images of microbial biofilms/communities
User: russel88
microbial-communities,A simple package for simulations of microbial growth experiments with realistic sources of error.
User: ryansmcgee
microbial-communities,This repository contains scripts to run 9 different shotgun metagenomics profiling software on a rat tissue dataset as well as scripts for their downstream analysis (import into R, alpha/beta diversity, & differential abundant analysis).
Organization: salvadorlab
microbial-communities,Minimal Supplying Community Search with constraint-based optimization methods.
User: sirno
microbial-communities,A coarse-grained biochemical resource allocation model of phototrophic growth.
User: surajsept
microbial-communities,Taller introductorio orientado a la visualización, análisis estadístico y ecológico en R, dirigido al manejo de datos en investigación, e impartido para la PUC durante 2021.
User: tamayoleivaj
microbial-communities,Reproducible documentation for "Heussler and Klammsteiner et al. (2023). Microbial influences on black soldier fly reproduction: A focus on egg surface colonization. Research Square Preprint"
User: tklammsteiner
Home Page: https://tklammsteiner.github.io/eggsurfacemicrobiome/
microbial-communities,From Waste to Feed | Insect Biotech Research Group
User: tklammsteiner
Home Page: https://www.fromwastetofeed.com/
microbial-communities,Interactive table for "Marcos Zambrano et al. (2023) A Toolbox of Machine Learning Software to Support Microbiome Analysis. Frontiers in Microbiology 14, 1250806"
User: tklammsteiner
Home Page: https://tklammsteiner.github.io/machine-learning-toolbox/
microbial-communities,Personal website
User: tklammsteiner
Home Page: https://tklammsteiner.github.io/
microbial-communities,Material for the lab course on anaerobic digestion
User: tklammsteiner
Home Page: https://tklammsteiner.github.io/waste-management-course/
microbial-communities,2017 September Microbial Community Analysis Workshop
Organization: ucdavis-bioinformatics-training
microbial-communities,October 2017 Microbial Community Analysis Workshop at ILRI Kenya
Organization: ucdavis-bioinformatics-training
microbial-communities,Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions
Organization: ucl-cssb
microbial-communities,Supplementary files for Ribeiro et al. ISME 2018
User: vaulot
microbial-communities,Implementation of soft body interaction models (for multiple particles). Includes applications to (1) soil mechanics, (2) microbiology. Variants of the method: discrete element method, individual based model, molecular dynamics.
User: vmilkev
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