Topic: metadynamics Goto Github
Some thing interesting about metadynamics
Some thing interesting about metadynamics
metadynamics,Fast estimation of ion-pairing for screening electrolytes
User: ajaymur91
metadynamics,Sparse Gaussian Process Potentials
User: amirhajibabaei
metadynamics,symbolic collective variable definitions and automation of metadynamics
User: amirhajibabaei
metadynamics,Unified Free Energy Dynamics (UFED) simulations with OpenMM
User: craabreu
Home Page: https://craabreu.github.io/ufedmm/
metadynamics,CREST - A program for the automated exploration of low-energy molecular chemical space.
Organization: crest-lab
Home Page: https://crest-lab.github.io/crest-docs/
metadynamics,C++ implementation of metadynamics simulation on a potential energy surface
User: danieljsharpe
metadynamics,Run metadynamics simulations and analyse free energy surfaces
User: hejops
metadynamics,Python package for efficient analysis of HILLS files generated by Plumed metadynamics simulations. Inspired by the Metadynminer package for R.
User: jan8be
Home Page: https://metadynreporter.cz/
metadynamics,A Python package enhancing VASP AIMD simulation
User: jcwang587
Home Page: https://xdatbus.readthedocs.io/en/latest/
metadynamics,This GitHub repo has folders required for setting up the Molecular Dynamics simulations, Metadynamics simulations, and a description of the post-processing codes that were used in the Patil et. al. PNAS 2021
User: kespatil
metadynamics,Using supervised machine learning to build collective variables for accelerated sampling
User: msultan
metadynamics,Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..
Organization: nnairiitk
metadynamics,CPMD Free Energy Surface Reconstruction
Organization: nnairiitk
Home Page: http://nnlabdoc.netlify.com/vreco_cpmd/introduction/
metadynamics,Standard molecular dynamics and metadynamics simulations of the Recoverin protein.
User: peppone98
metadynamics,Deep learning for collective variables.
User: rangsimanketkaew
Home Page: https://lubergroup.pages.uzh.ch/deepcv/
metadynamics,Molecular Dynamics - Simulation Analysis and Preparation Suite
User: ravenswing
metadynamics,Auxiliary tools and scripts initially made for my PhD projects.
User: ravenswing
metadynamics,Useful Collective Variables for OpenMM
Organization: redesignscience
Home Page: https://redesignscience.github.io/cvpack/latest
metadynamics,Cryptic pocket prediction using AlphaFold 2
User: sbhakat
metadynamics,tICA to capture local loop motion. Describes how to analyse loop movement using TICA and how to run PT-Metad using TIC vectors
User: sbhakat
metadynamics,Binary classifier as CV in enhanced sampling
User: sbhakat
metadynamics,A package that allows you to read COLVAR output from Plumed and access data
User: sbhakat
metadynamics,How one can use binary classifiers, variational auto-encoder, TICA, PCA, distance and dihedral order parameters as CVs in context of pepsin-like aspartic proteases e.g. BACE1 and plasmepsin-II.
User: sbhakat
metadynamics,A package to help automate molecular dynamics calculations
User: theavey
metadynamics,Plumology - Tools to analyse biased molecular dynamics simulations
User: tlhr
metadynamics,New implementation of TS-PPTIS working with Gromacs 5.X and Plumed 2.X
Organization: ucl-tspptis
metadynamics,Files for PLUMED Masterclass-22-11
Organization: valsson-group
metadynamics,Simple tools for obtaining time from biased molecular dynamics simulations
Organization: valsson-group
metadynamics,A repository providing jupyter notebooks and simulation inputs that accompany the mini course Hands-on tutorials: Advanced sampling methods using GROMACS
User: wehs7661
Home Page: https://weitsehsu.com/course/advanced_sampling
metadynamics,A repository for the test systems for the development of alchemical metadynamics
User: wehs7661
metadynamics,A python package for simulating sampling behaviors of enhanced sampling simulations
User: wehs7661
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.