kespatil Goto Github PK

alk_files_2021_pnas

This GitHub repo has folders required for setting up the Molecular Dynamics simulations, Metadynamics simulations, and a description of the post-processing codes that were used in the Patil et. al. PNAS 2021

alphatask

Stores the Matlab Codes of Graduate Assignments

analyze_md_in_python

autoencoder_protein_intermediates

backend_coding

biomedical_informatics_ml_codes

This repository contains jupyter notebooks that have my extensive works using KNN, Decision Trees, Principal Component Analysis, Neural Net, Convolutional Neural Net and Autoencoders for the course in Biomedical Informatics (BMIN521) titled :"Advanced Methods and Health Applications in Machine Learning" at Perelman School of Medicine, UPenn

chiplicity.github.io

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

covid_drug_repurposing

This is my attempt to find repurposed drugs against COVID using computational techniques. NOTE: This is strictly an academic exercise and the results are totally not relevant to any clinical application.

demo

This is a demo repository

egfr_kinase

This GitHub repo has folders required for setting up the molecular dynamics simulations, indus simulations and post-processing codes for studies on EGFR kinase and Exon 19 deletion mutations

fsd-2.0-git

kinase_resources

This consists of the code and structure resources for kinases

machine-learning-with-python

Practice and tutorial-style notebooks covering wide variety of machine learning techniques

mek_kinase

This GitHub repo has folders required for setting up the molecular dynamics simulations, metadynamics simulations, and post-processing codes for studies on MEK kinase and mutations

ml_competition_cis_520

This ML based project was done in 2018 to predict the health status of US counties using tweets and socio-economic factors

mutator

pandas-merge-tutorial

A tutorial on merging and joining data frames using Python Pandas. See accommpanying blog post at www.shanelynn.ie

practical_cheminformatics_tutorials

Practical Cheminformatics Tutorials

react-codes

topoprot

webscrapping_ilincs

This repo contains webscrapping code that will take in list of drugs aimed at targetting Prostate Cancer disease and output the rank ordered list of them based on LINCS(http://www.ilincs.org/ilincs/) gene signature reversal.