Topic: metabolic-reconstruction Goto Github
Some thing interesting about metabolic-reconstruction
Some thing interesting about metabolic-reconstruction
metabolic-reconstruction,:m: Metabolic network completion
Organization: bioasp
Home Page: https://bioasp.github.io/meneco
metabolic-reconstruction,
User: cfrioux
metabolic-reconstruction,Genome-scale metabolic model of Methylococcus capsulatus.
User: christianlieven
metabolic-reconstruction,An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Organization: cnapy-org
Home Page: https://cnapy-org.github.io/CNApy-guide/
metabolic-reconstruction,Chemical reaction balancing web service
Organization: dbkgroup
metabolic-reconstruction,Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.
User: earmingol
metabolic-reconstruction,A pathologic file generator (PLFG) is implemented to assist and facilitate the curation progress of every computationally predicted pathway genome database (PGDB).
User: giostamoulos
metabolic-reconstruction,CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
Organization: hallamlab
metabolic-reconstruction,Metabolic pathway inference using non-negative matrix factorization with community detection
Organization: hallamlab
Home Page: https://github.com/hallamlab/triUMPF
metabolic-reconstruction,Enzymatic Link Prediction
Organization: hassounlab
metabolic-reconstruction,Tool for the reconstruction of context-specific metabolic models based on omics data from several sources
User: jorgeacgomes
metabolic-reconstruction,Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
User: jotech
metabolic-reconstruction,Python implementation of mgpipe
Organization: korem-lab
Home Page: https://korem-lab.github.io/pymgpipe/
metabolic-reconstruction,Software developed and main results obtained in the Master dissertation: A model validation pipeline for healthy tissue genome-scale metabolic models. Dissertation link to be added.
User: mariapessoa
metabolic-reconstruction,KEGG Module Evaluation Tool
User: matteopaluh
metabolic-reconstruction,MNXref: Reconciliation of metabolites and biochemical reactions for metabolic networks
Organization: metanetx
metabolic-reconstruction,Diversity-based enumeration of optimal context-specific metabolic networks
Organization: metexplore
metabolic-reconstruction,An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
User: omixer
metabolic-reconstruction,The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Organization: opencobra
Home Page: https://opencobra.github.io/cobratoolbox
metabolic-reconstruction,memote – the genome-scale metabolic model test suite
Organization: opencobra
Home Page: https://memote.readthedocs.io/
metabolic-reconstruction,A RMosek optimization interface for the Sybil package
User: r2rahul
metabolic-reconstruction,A manually curated database of human gut metabolic modules.
Organization: raeslab
metabolic-reconstruction,A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
Organization: raeslab
metabolic-reconstruction,An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
Organization: resendislab
Home Page: http://resendislab.github.io/corda
metabolic-reconstruction,epigenome scale metabolic modeling for cancer metabolism
Organization: sriram-lab
metabolic-reconstruction,The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
Organization: sysbiochalmers
Home Page: http://sysbiochalmers.github.io/RAVEN/
metabolic-reconstruction,Genome-scale metabolic model of Rhodotorula toruloides
Organization: sysbiochalmers
metabolic-reconstruction,Genome-scale model of Yarrowia lipolytica.
Organization: sysbiochalmers
Home Page: http://www.nature.com/articles/npjsba20165
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