Giter Club home page Giter Club logo

utilities's Introduction

St. Jude Cloud Utilities

This repository contains an easily installable package for all of the utility scripts created for and used on the St. Jude Cloud team (broadly speaking). The repository is structured as a single package that is goverened by poetry.

You can use the snippet below to install the package and access the scripts outlined below.

pip install stjudecloud-utilities

Scripts

The following scripts are included in the package:

deduplicate-feature-counts

A utility script to deduplicate St. Jude Cloud file names. Assumes files are annotated with St. Jude project names. Retains files based on the PRIORITIES list of prioritized projects.

Usage: dx ls /counts | deduplicate-feature-counts | bash

gtf-to-rseqc-bed

A utility script for converting Gencode GTFs into the custom BED12 format used by the RSeQC software package.

Usage: gtf-to-rseqc-bed <gencode gtf> > gencode.vFOO.bed

Tests

Given that this repo is still new, there are no tests. When we add tests, we will update the README.

๐Ÿค Contributing

Contributions, issues and feature requests are welcome!
Feel free to check issues page. You can also take a look at the contributing guide.

๐Ÿ“ License

Copyright ยฉ 2021 St. Jude Cloud Team.
This project is MIT licensed.

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.