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bioinformatics-tool-template

cde-transformers

TODO

cgc-go

cloud-app-tutorial

Cloud application examples for St. Jude Cloud.

docs

Documentation on St. Jude Cloud.

dx-build_visualizer

dx-coverage_bw

dx-fuzzion

DNAnexus implementation of Fuzzion (https://github.com/stjude/fuzzion)

dx-manta

dx-rapid_rnaseq

dx-rnapeg

dx-rnaseq_standard

Monolithic DNAnexus implementation of RNA-Seq V2 pipeline with miniwdl

dx-star

DNAnexus app wrapper for STAR alignment

dx-tag_outputs

expression-classification

merge-counts

Utility for merging RNA-seq expression counts files from St. Jude Cloud.

mkdocs-stjudecloud

A Material Design theme for MkDocs

msgenctl

CLI to manage Microsoft Genomics workflows

mtsg

Find and quantify COSMIC mutational signatures across samples

ngsderive

Forensic analysis tool useful in backwards computing information from next-generation sequencing data.

oliver

An opinionated Cromwell orchestration manager.

release-python-action

Github Action to release a Poetry-based Python app as we regularly do on the St. Jude Cloud project.

rfcs

Request for Comments (RFCs) on the St. Jude Cloud Project.

stjude_htseq_count

theme

Component library and CSS themes for applications on the St. Jude Cloud project.

university

Educational materials for the St. Jude Cloud project.

utilities

Utility scripts created for and used on the St. Jude Cloud team.

wdldoc

Create WDL documentation using Markdown.

workflows

Bioinformatics workflows developed for and used on the St. Jude Cloud project.