Hi there. I'm newly trying out triceratops to help with a TESS paper I'm finalizing (and need the kind of statistical validation that Triceratops can provide).
I finally got all the modules to load properly in a dedicated conda environemnt and I swapped the shell to bash so that lightkurve will run (Catalina seems to default to a zsh shell which causes issues). I'm working through the TESS tutorial notebook and hit the following issue in the 5th code cell, where we first call:
target.calc_probs(time=lc.time.value, flux_0=lc.flux.value, flux_err_0=np.mean(lc.flux_err.value), P_orb=P_orb)
---------------------------------------------------------------------------
TypingError Traceback (most recent call last)
File <timed exec>:9, in <module>
File /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/triceratops/triceratops.py:731, in target.calc_probs(self, time, flux_0, flux_err_0, P_orb, contrast_curve_file, filt, N, parallel, drop_scenario, verbose, flatpriors, exptime, nsamples, molusc_file, trilegal_fname)
725 if verbose == 1:
726 print(
727 "Calculating TP scenario "
728 + "probabilitiey for " + str(ID) + "."
729 )
--> 731 res = lnZ_TTP(
732 time, flux, flux_err, P_orb,
733 M_s, R_s, Teff, Z,
734 N, parallel, self.mission,
735 flatpriors,
736 exptime, nsamples
737 )
738 # self.res_TTP = res
739 j = 0
File /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/triceratops/marginal_likelihoods.py:144, in lnZ_TTP(time, flux, sigma, P_orb, M_s, R_s, Teff, Z, N, parallel, mission, flatpriors, exptime, nsamples)
142 continue
143 if (incs[i] >= inc_min) & (coll[i] == False):
--> 144 lnL[i] = -0.5*ln2pi - lnsigma - lnL_TP(
145 time, flux, sigma, rps[i],
146 P_orb[i], incs[i], a, R_s, u1, u2,
147 eccs[i], argps[i],
148 exptime=exptime, nsamples=nsamples
149 )
151 N_samples = 100
152 idx = (-lnL).argsort()[:N_samples]
File /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/triceratops/likelihoods.py:186, in lnL_TP(time, flux, sigma, R_p, P_orb, inc, a, R_s, u1, u2, ecc, argp, companion_fluxratio, companion_is_host, exptime, nsamples)
152 def lnL_TP(time: np.ndarray, flux: np.ndarray, sigma: float, R_p: float,
153 P_orb: float, inc: float, a: float, R_s: float,
154 u1: float, u2: float, ecc: float, argp: float,
(...)
157 exptime: float = 0.00139,
158 nsamples: int = 20):
159 """
160 Calculates the log likelihood of a transiting planet scenario by
161 comparing a simulated light curve and the TESS light curve.
(...)
184 Log likelihood (float).
185 """
--> 186 model = simulate_TP_transit(
187 time, R_p, P_orb, inc, a, R_s, u1, u2,
188 ecc, argp,
189 companion_fluxratio, companion_is_host,
190 exptime, nsamples
191 )
192 return 0.5*(np.sum((flux-model)**2 / sigma**2))
File /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/triceratops/likelihoods.py:50, in simulate_TP_transit(time, R_p, P_orb, inc, a, R_s, u1, u2, ecc, argp, companion_fluxratio, companion_is_host, exptime, nsamples)
48 # step 1: simulate light curve assuming only the host star exists
49 tm.set_data(time, exptimes=exptime, nsamples=nsamples)
---> 50 flux = tm.evaluate_ps(
51 k=R_p*Rearth/(R_s*Rsun),
52 ldc=[float(u1), float(u2)],
53 t0=0.0,
54 p=P_orb,
55 a=a/(R_s*Rsun),
56 i=inc*(pi/180.),
57 e=ecc,
58 w=(90-argp)*(pi/180.)
59 )
60 # step 2: adjust the light curve to account for flux dilution
61 # from non-host star
62 if companion_is_host:
File /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/models/ma_quadratic.py:183, in QuadraticModel.evaluate_ps(self, k, ldc, t0, p, a, i, e, w, copy)
180 if ldc.size != 2 * self.npb:
181 raise ValueError("The quadratic model needs two limb darkening coefficients per passband")
--> 183 flux = quadratic_model_s(self.time, k, t0, p, a, i, e, w, ldc,
184 self.lcids, self.pbids, self.epids, self.nsamples, self.exptimes, self.npb,
185 self.ed, self.ld, self.le, self.kt, self.zt, self.interpolate)
186 return squeeze(flux)
File /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/numba/core/dispatcher.py:468, in _DispatcherBase._compile_for_args(self, *args, **kws)
464 msg = (f"{str(e).rstrip()} \n\nThis error may have been caused "
465 f"by the following argument(s):\n{args_str}\n")
466 e.patch_message(msg)
--> 468 error_rewrite(e, 'typing')
469 except errors.UnsupportedError as e:
470 # Something unsupported is present in the user code, add help info
471 error_rewrite(e, 'unsupported_error')
File /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/numba/core/dispatcher.py:409, in _DispatcherBase._compile_for_args.<locals>.error_rewrite(e, issue_type)
407 raise e
408 else:
--> 409 raise e.with_traceback(None)
TypingError: Failed in nopython mode pipeline (step: nopython frontend)
Failed in nopython mode pipeline (step: nopython frontend)
Failed in nopython mode pipeline (step: nopython frontend)
Cannot unify float64 and array(float64, 1d, C) for 't0.2', defined at /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/orbits/taylor_z.py (320)
File "../../../../../../../../Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/orbits/taylor_z.py", line 320:
def find_contact_point(k: float, point: int, y0, vx, vy, ax, ay, jx, jy, sx, sy):
<source elided>
i = 0
while abs(t2 - t0) > 1e-6 and i < 100:
^
During: typing of assignment at /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/orbits/taylor_z.py (320)
File "../../../../../../../../Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/orbits/taylor_z.py", line 320:
def find_contact_point(k: float, point: int, y0, vx, vy, ax, ay, jx, jy, sx, sy):
<source elided>
i = 0
while abs(t2 - t0) > 1e-6 and i < 100:
^
During: resolving callee type: type(CPUDispatcher(<function find_contact_point at 0x7fac899713a0>))
During: typing of call at /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/orbits/taylor_z.py (360)
During: resolving callee type: type(CPUDispatcher(<function find_contact_point at 0x7fac899713a0>))
During: typing of call at /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/orbits/taylor_z.py (360)
File "../../../../../../../../Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/orbits/taylor_z.py", line 360:
def t14(k: float, y0, vx, vy, ax, ay, jx, jy, sx, sy):
t1 = find_contact_point(k, 1, y0, vx, vy, ax, ay, jx, jy, sx, sy)
^
During: resolving callee type: type(CPUDispatcher(<function t14 at 0x7fac8995cdc0>))
During: typing of call at /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/models/numba/ma_quadratic_nb.py (611)
During: resolving callee type: type(CPUDispatcher(<function t14 at 0x7fac8995cdc0>))
During: typing of call at /Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/models/numba/ma_quadratic_nb.py (611)
File "../../../../../../../../Applications/anaconda/envs/triceratops/lib/python3.8/site-packages/pytransit/models/numba/ma_quadratic_nb.py", line 611:
def quadratic_model_s(t, k, t0, p, a, i, e, w, ldc, lcids, pbids, epids, nsamples, exptimes, npb, edt, ldt, let, kt, zt, interpolate):
<source elided>
y0, vx, vy, ax, ay, jx, jy, sx, sy = vajs_from_paiew(p, a, i, e, w)
half_window_width = 0.025 + 0.5 * t14(k[0], y0, vx, vy, ax, ay, jx, jy, sx, sy)
^
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