Related Issues (20)
- Use data.table in aggregate_duplicate() for huge data frames HOT 3
- Confused on TidyBulk's desired format HOT 2
- Fixing the github actions HOT 1
- Arguement "minimum_proportion" of the function "keep_abundant()" appears to not do anything HOT 2
- Using contrasts instead of .contrasts is silently ignored HOT 2
- Retain count_scaled in as_SummarizedExperiment() HOT 3
- Issue with DESeq2 HOT 9
- create_tt_from_bam_sam_bulk function recuires org.Hs database and is therefore incompatible with other organisms HOT 2
- pivot_sample and pivot_transcript convert .sample and .feature to sample and feature HOT 2
- Allow logFC shrinkage in DESeq HOT 4
- Normalization method (scaling) HOT 9
- for SE save internals within the metadata rather than attributes.
- github action mac fail HOT 1
- DEG Analysis Between Single Group with Multiple Groups HOT 6
- "Proportion of variance explained" values on reduce_dimensions() output HOT 1
- github actions give preflight error for the whole tidy stack HOT 1
- ERROR; return code from pthread_create() is 22 HOT 3
- pathway analysis using tidybulk HOT 8
- Design and contrasts for tidybulk test differential abundance function HOT 9
- Remove batch effect in test_differential_abundance
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