Confused on TidyBulk's desired format about tidybulk HOT 2 CLOSED

Hello John,

thanks for bringing these things up. We have improved the documentation and error message for consistency. Please install devtools::install_github("stemangiola/tidybulk@fix-docs-terminology"). And let us know if the experience is better.

Error message of the %>% tidybulk() command when I am attempting to use a tibble with tidybulk:

The error message (now improved) could be confusing to some. It just means that you have to fill the arguments .sample .transcript and .abundance with the respective column names.

2) Documentation which ships with Tidybulk Bioconductor version :

That has changed. Please tell us what you think.

What would you recommend is a good way for me to use my tibble with tidyBulk?

your_data_frame %>%
    tidybulk(.sample = sample, .transcript = transcript, .abundance = abundance)

From a tidy tibble you can apply each function in the tidybulk framework also without ever calling tidybulk(...) You just would have to specify every time .sample = sample, .transcript = transcript, .abundance = abundance

from tidybulk.

That looks great, thank you!

from tidybulk.