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A scoping error was hidden in this line:
parser_t parser = ( args.fastq ) ? parser_t( args.fastq ) : parser_t( args.fasta, args.qual );

One shouldn't create an object within a conditional statement and use it after the conditional statement as it will lose scope, "parser" in this case. It works in Linux, but it shouldn't.
One solution is to modify the constructor to include the conditional statement.