Hi Tamas,
It is wonderful that you made this great tool, AND, that you made it so accessible w/ a docker. I am excited to be applying it to my data.
The docker is crashing for me. The logs are attached. I tried it on two subjects, one with --keep-derivatives and one without. The error messages seem a bit different. Attaching the logs now.
Archive.zip
Both subjects are in valid BIDS format.
I have one guess as to a potential problem. I have data from multiple time points (pre- and post-treatment), so my bids structure is subject/ses-XX/anat,func,fmap. Perhaps your code does not expect the session level? Also, my data is all gzipped
Thanks
Yoni Ashar
Wager lab