Name: Tamas Spisak
Type: User
Company: Predictive NeuroImaging Lab, Institute of Artificial Intelligence in Medicine, Department of Diagnostic and Interventional Radiology and Neuroradiology,, University Hospital Essen
Bio: Professor of Predictive Neuroscience
@pni-lab @placebo-imaging-consortium
Twitter: spisaktamas
Location: Essen, Germany
Blog: https://pni-lab.github.io/
Tamas Spisak's Projects
:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yourse!
Minimal scripts available for predictions on multiple datasets
Brain Imaging Data Structure (BIDS) Specification
Website for the Brain Imaging Data Structure standard.
Project repository of the Matters Arising commentary "Multivariate BWAS can be replicable with moderate sample sizes in some cases""
Configurable Pipeline for the Analysis of Connectomes
Collection of utilities / helper scripts to make life easier on our HPC clusters.
My latex CV with the 'moderncv' package
My latex CV with the twentysecondcv package
Detect and correct bias in neuroimaging
Shields.io in a Docker image :whale:
This an example app that can serve as a template.
MkDocs-based collection of jazz standard notations
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Source code for FSL: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
Plot fMRI activation patterns in gradient space
Magpie contains a number of scripts for running Big Data software in HPC environments, including Hadoop and Spark. There is support for Lustre, Slurm, Moab, Torque. LSF, and more.
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
Generate custom Docker and Singularity images, and minimize existing containers
Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"
Analyses for "The effect of experimental placebo interventions on cerebral pain signature activity – a meta-analysis" by the placebo imaging collaboration. Requires MATLAB (2016b+SPM12+CANlab toolbox), R(for linear mixed models, only), MRIcroGL (PASCAL-based program for plotting/rendering images). Start at A_Run_All_Analyses.m.
Probabilistic Threshold-Free Cluster Enhancement of Neuroimages
c++ implementation of the pTFCE method (https://spisakt.github.io/pTFCE/)
pTFCE SPM Toolbox
Pypelines Utilizing a Modular Inventory
Extension interfaces and modular workflow system for using nipype for small-animal MR imaging
Short Lecture on Reinforcement Learning: model-free vs. model-based
The Resting-state Pain susceptibility Network signature.
Statistical data visualization in Python