Name: Tamas Spisak
Type: User
Company: Predictive NeuroImaging Lab, Institute of Artificial Intelligence in Medicine, Department of Diagnostic and Interventional Radiology and Neuroradiology,, University Hospital Essen
Bio: Professor of Predictive Neuroscience @pni-lab @placebo-imaging-consortium
Twitter: spisaktamas
Location: Essen, Germany
badges
:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yourse!
benchmark_rsfmri_prediction
Minimal scripts available for predictions on multiple datasets
bids-specification
Brain Imaging Data Structure (BIDS) Specification
bids-website
Website for the Brain Imaging Data Structure standard.
bwas_comment
Project repository of the Matters Arising commentary "Multivariate BWAS can be replicable with moderate sample sizes in some cases""
c-pac
Configurable Pipeline for the Analysis of Connectomes
cluster-utils
Collection of utilities / helper scripts to make life easier on our HPC clusters.
cv_moderncv
My latex CV with the 'moderncv' package
cv_twentysecondcv
My latex CV with the twentysecondcv package
dataset-bias
Detect and correct bias in neuroimaging
docker-shields
Shields.io in a Docker image :whale:
example
This an example app that can serve as a template.
fakesite
MkDocs-based collection of jazz standard notations
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
fsl
Source code for FSL: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
gradientplot
Plot fMRI activation patterns in gradient space
magpie
Magpie contains a number of scripts for running Big Data software in HPC environments, including Hadoop and Spark. There is support for Lustre, Slurm, Moab, Torque. LSF, and more.
mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
neuroimaging_pattern_masks
Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
notebooks-nonlinear-high-order-epistasis
Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"
placeboimagingmetaanalysis
Analyses for "The effect of experimental placebo interventions on cerebral pain signature activity – a meta-analysis" by the placebo imaging collaboration. Requires MATLAB (2016b+SPM12+CANlab toolbox), R(for linear mixed models, only), MRIcroGL (PASCAL-based program for plotting/rendering images). Start at A_Run_All_Analyses.m.
ptfce
Probabilistic Threshold-Free Cluster Enhancement of Neuroimages
ptfce_c
c++ implementation of the pTFCE method (https://spisakt.github.io/pTFCE/)
ptfce_spm
pTFCE SPM Toolbox
pumi
Pypelines Utilizing a Modular Inventory
ratpype
Extension interfaces and modular workflow system for using nipype for small-animal MR imaging
rl_lecture
Short Lecture on Reinforcement Learning: model-free vs. model-based
rpn-signature
The Resting-state Pain susceptibility Network signature.
seaborn
Statistical data visualization in Python
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
