sjanssen2 / ggmap Goto Github PK

I need to update to latest seaborn and adjust all truth images :-/

automatically remove cache file if size == 0b because this is due to a faulty run

The function "_executor" in the script "analysis.py" at the path "ggmap/ggmap/analysis.py" should provide a new parameter to set a user defined path for "dir_temp" when using "use_grid".

currently, there is no unittest for drawMap in place, also the docstring is quite ugly.

rarefaction curves in QIIME cause some problems + are ugly, i.e. re-scaling is not possible. I also don't understand why it is necessary to look at several metadata columns.
Therefore, I should go with plt.plot() and do the single plots by myself.
Also: caching is possible when storing grouped values instead of IMAGES.

add a function to create emperor plots for given beta div dict and metadata.

/tmp/ipykernel_2096454/2665748023.py:1: FutureWarning: iteritems is deprecated and will be removed in a future version. Use .items instead.

sig_cols = {k for k,v in corr_diversity['results'].groupby('column')['p-value'].min().iteritems()

/homes/tbaeuerl/ggmap/ggmap/snippets.py:449: FutureWarning: The default value of numeric_only in DataFrameGroupBy.sum is deprecated. In a future version, numeric_only will default to False. Either specify numeric_only or select only columns which should be valid for the function.

counts_taxonomy = counts_taxonomy.reset_index().groupby(rank).sum()

/homes/tbaeuerl/ggmap/ggmap/snippets.py:702: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.

rank_counts = rank_counts.append(lowReadTaxa)

Why is stderr and stdout in wrong places ./ instead of TMP/ ?