sjanssen2 Goto Github PK

american-gut-analyses

american-gut-web

The website for the American Gut Project participant portal

bbx-profiling-evaluation-dk

bioconda-recipes

Conda recipes for the bioconda channel.

busywork

conda-recipes

conda recipes for bioinformatic tools like blast+, infernal, etc.

deblur

Deblur is a greedy deconvolution algorithm based on known read error profiles.

deepblast

Neural Networks for Protein Sequence Alignment

docker_profiling_tools

Stefans Collection of Dockerfiles and helper scripts for profiling tools

emp

Data, code and analysis results for the Earth Microbiome Project.

empress

A very fast and scalable phylogenetic visualization viewer

forward-backward-hmm

genome-subsampler

ggmap

horizomer

Workflow for detecting genome-wide horizontal gene transfers

intarna

Efficient target prediction incorporating accessibility of interaction sites

labadmin

Administration website for the Knight Lab

metalonda

METAgenomic LONgitudinal Differential Abundance method

micronota

annotation pipeline for microbial genomes and metagenomes

microprot

structural annotation pipeline for microbial genomes and metagenomes

oecophylla

shotgun pipeline

opal

OPAL: Assessing taxonomic profilers for metagenomes

phylorecruit

Phlogeny based recruiting of missing annotations

pplacer

Phylogenetic placement and downstream analysis

pythonscript

q2-dada2

QIIME 2 plugin wrapping DADA2

q2-diversity

q2-fragment-insertion

QIIME2 plugin for fragment insertion

qiita

Qiita - A multi-omics databasing effort

qiita_client

A python library that simplifies the communication between the plugins and Qiita's REST api