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protein-embedding-retrieval

protein-function-prediction

protein-glm

Implementation of a protein autoregressive language model, but with autoregressive infilling objective (editing subsequences capability)

protein-interaction-network

Computes a molecular graph for protein structures.

protein-language-challenge

Copenhagen Bioinformatics Hackathon 2021 Protein Edition - Protein Language Challenge

protein-sequence-embedding-iclr2019

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

protein-structure-dl

Classification and regression exploration using protein structures

protein-transformer

Predicting protein structure through sequence modeling

protein-visualizer

shows basic disulfide / glycoslyation

protein_ae

Autoencoder for Protein Dynamics Analysis

protein_bert

protein_folding

protein_ml

Machine learning workflows for analyzing high-throughput protein data

protein_structure_prediction_deeplearning

Secondary Protein Structure Prediction using Neural Networks and Deep Learning.

proteinclusteringpipeline

a pipeline to cluster proteins into families

proteindescriptor

a protein descriptor for site prediction

proteindf

Canonical (Kohn-Sham) molecular orbital calculation software for large molecules such as protein

proteingcn

ProteinGCN: Protein model quality assessment using Graph Convolutional Networks

proteingraphml

Protein Graph in Python for MetaPath-ML and more.

proteinlm

Protein Language Model

proteinmpnn

Code for the ProteinMPNN paper

proteinnet

Standardized data set for machine learning of protein structure

proteinsecondarystructure-cnn

Protein Secondary Structure predictor using Convolutional Neural Networks

proteinsolver

Generate new protein sequences using graph neural networks.

proteomics-metadata-standard

The Proteomics Experimental Design file format: Standard for experimental design annotation

proteoq

TMT data from tandem MS experiments

proteotorch

Deep learning and ultrafast machine learning for peptide identification of shotgun proteomics data.

protlearn

Preprocessing and feature engineering for protein and peptide sequences

protmlp

MLP regression of protein sequences

protobuf

Protocol Buffers - Google's data interchange format