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open_spiel

OpenSpiel is a collection of environments and algorithms for research in general reinforcement learning and search/planning in games.

openprotein-dashboard

Performance Dashboard for OpenProtein

openqasm

Gate and operation specification for quantum circuits

openseg.pytorch

The Pytorch code of OCNet series and SegFix.

opensourcemolecularmodeling.github.io

Catalog of Open Source Molecular Modeling Projects

openssl

TLS/SSL and crypto library

openstructure

Open-Source Computational Structural Biology Framework

opticalcnn

hybrid optical electronic convolutional neural networks

optimizer

optuna

A hyperparameter optimization framework

opus_rota3

OPUS-Rota3: Improving Protein Side-Chain Modeling by Deep Neural Networks and Ensemble Methods

orangepi-buildlinux

orangepi_h3_linux

Contains uboot and kernel source code, there are two kernel versions, one is 3.4.113, the other is 4.9. You can choose different kernel version to build your own image using build scripts

orbtk

The Rust UI-Toolkit.

ordinarydiffeq.jl

High performance differential equation solvers for ordinary differential equations, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)

osic-pulmonary-fibrosis-progression

1st place solution of OSIC Pulmonary Fibrosis Progression competition at Kaggle

ost_pymodules

A set of modules for advanced analysis of molecular structures and MD trajectories using the OpenStructure (http://www.openstructure.org) software.

otgnn

OTGNN code

over9000

Over9000 optimizer

overlap_local_sgd

Implementation of (overlap) local SGD in Pytorch

oxyplot

A plotting library for .NET

p-gnn

Position-aware Graph Neural Networks

p2rank

P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.

paa

A PyTorch implementation of the paper `Probabilistic Anchor Assignment with IoU Prediction for Object Detection` ECCV 2020 (https://arxiv.org/abs/2007.08103)

paccmann_proteomics

PaccMann models for protein language modeling

paccmann_sarscov2

Code for the paper in MLST: Data-driven Molecular Design for Discovery and Synthesis of Novel Ligands - A case study on SARS-CoV-2 https://iopscience.iop.org/article/10.1088/2632-2153/abe808

packmol

Packmol - Initial configurations for molecular dynamics simulations

paddlehelix

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

pae_to_domains

Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix

paired_cell_inpainting

Self-supervised learning for microscopy images