Comments (1)
enio23
commented on July 18, 2024
Hello,
Yes indeed, generate_meas() function and few others have been removed since I had to adapt the CARNIVAL pipeline according to Bioconductor guidelines and requirements. In case you are integrating TF and pathway activity scores, I will soon add an example in the README about how one can do that. But for this I am waiting for the new release of Bioconductor packages where CARNIVAL and newest versions of PROGENy and DoRothEA packages will be there. This is expected to happen in the next few days within this mont but if you need any urgent help you can contact me at [email protected].
Best,
from carnival.
Related Issues (20)
- Feature Request: Omnipath network from original paper HOT 2
- Very different results with latest CARNIVAL release HOT 5
- Wrong column name inside the measurementsDf? HOT 1
- cbc error : 'data' must be of a vector type, was 'NULL' despite solution found HOT 1
- Reported 0 for perturbations activity HOT 1
- No DOT figure HOT 1
- Gurobi needs documentation
- How to use CARNIVAL to fit multiple conditions data HOT 2
- Some issues HOT 2
- Failing tests because local files were used HOT 1
- runCARNIVAL HOT 1
- Error in file(file, "rt"): cannot open the connection HOT 2
- progenyMembers.RData HOT 2
- Description about the output HOT 4
- error running Carnival with cbc solver HOT 1
- Carnival usage error HOT 2
- Transcription factors (TFs) absent from final carnival result HOT 12
- [BUG] Your bug or feature request HOT 3
- Using custom network for transcription factor input HOT 11
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from carnival.