Comments (1)
gabora
commented on July 18, 2024
Hi @fereshtehvosta,
We haven't ran CARNIVAL on single cells yet, so I cannot give you reliable information.
In theory, you can run on single cell level, however the expression data of single cells are usually very noisy.
Maybe, you could try to identify clusters, then aggregate the cells from the same cluster and then run CARNIVAL on each cluster.
best,
Attila
from carnival.
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from carnival.