Comments (5)
Hi Layla,
Sorry for the delayed response. There was indeed an exporting solution bug in the new version. Can you check if the results are similar now?
from carnival.
Hi! I was about to check it but I had an issue re-installing the package from GitHub.
Malformed Depends or Suggests or Imports or Enhances field.
Offending entries:
plyr
rjson
Entries must be names of packages optionally followed by '<=' or '>=',
white space, and a valid version number in parentheses.
I think this is due to a comma missing after "plyr" in DESCRIPTION file, see below:
Imports:
readr,
stringr,
lpSolve,
igraph,
dplyr,
plyr <- (here)
rjson,
rmarkdown
from carnival.
Can you try once more?
from carnival.
Thanks - running now. Will let you know in an hour or so!
EDIT: Sorry, my Rstudio server is crashing (OOO and connection is unstable here also w/ VPN). I will take a look on Monday when I'm back home and let you know.
from carnival.
Network size as expected now -- thanks!
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Related Issues (20)
- Writing cplex command file -> error thrown HOT 23
- Wrong column name inside the measurementsDf? HOT 1
- cbc error : 'data' must be of a vector type, was 'NULL' despite solution found HOT 1
- Reported 0 for perturbations activity HOT 1
- No DOT figure HOT 1
- Gurobi needs documentation
- How to use CARNIVAL to fit multiple conditions data HOT 2
- Some issues HOT 2
- Failing tests because local files were used HOT 1
- runCARNIVAL HOT 1
- Error in file(file, "rt"): cannot open the connection HOT 2
- progenyMembers.RData HOT 2
- Description about the output HOT 4
- error running Carnival with cbc solver HOT 1
- Carnival usage error HOT 2
- Transcription factors (TFs) absent from final carnival result HOT 12
- [BUG] Your bug or feature request HOT 3
- Using custom network for transcription factor input HOT 11
- General Recommendations for preprocessing RNA-Seq data HOT 2
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