Comments (10)
@julou Thanks for the report! Yup, missed a CMD in the new mapping. My apologies. Rebuilding the 4.0.x images now and should be up in a little bit.
p.s. the new 4.0.x images now use the RStudio Package Manager binary builds for Ubuntu Focal (20.04), which should dramatically reduce install times when using binder.
Again thanks for the report; yeah, any rocker
based image issues are best filed in these repos just so I see it. apologies we hadn't caught this!
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Glad that I finally reached the right place ><
I will sound dense here, but could you please instruct how I could force reloading the binder image. Because I now see the 4.0.1 images on dockerhub and all 4.0.x images have an update time that is after your last message so I believe they have been updated but neither https://mybinder.org/v2/gh/rocker-org/binder/master?urlpath=rstudio nor https://mybinder.org/v2/gh/julou/BinderWithR/master?urlpath=rstudio works.
In fact I'm not sure whether it's a refresh issue or that a bug is still lying around: I even updated https://mybinder.org/v2/gh/julou/BinderWithR/master?urlpath=rstudio to force it using 4.0.1 since I know this one is new, but I get the exact same error message…
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p.s. the new 4.0.x images now use the RStudio Package Manager binary builds for Ubuntu Focal (20.04), which should dramatically reduce install times when using binder.
that's great news!
In fact I already included this feature for restoring renv with my R-3.6.3 images.
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Whoopsies, that's what I get for replying to the thread before waiting for the image to finish building. Had also forgotten to drop out of root and back to USER in the Dockerfile. It's building again, let's both check again once the new images repost
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Thanks for following up. Still getting the following on both repos:
Step 7/9 : RUN chown -R ${NB_USER} ${HOME}
---> Running in 2543131df3dd
chown: invalid user: ‘jovyan’
Removing intermediate container 2543131df3dd
The command '/bin/sh -c chown -R ${NB_USER} ${HOME}' returned a non-zero code: 1
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Yeah… it now works! Thank you very much :)
Now I have to figure out how to get renv
installed on 4.0.x images (which works flawlessly in e.g. 3.6 but somehow crashes on 4.0.x). I might open another issue soon :-/
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well… maybe I claimed victory too early!
It turns out that with the current images, the GitHub repo is copied at the root of the file system, instead of in the home directory… Am I right thinking that this must be solved in the Docker image?
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Thanks! yeah, you can always address these in your Dockerfiles in the repos, but I think it would be nicer for us to set that in our Dockerfiles for convenience. Thanks for pointing that out, I'll add a WORKDIR call in now.
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I think we should finally be all good here? At least things look ok if you click the binder button in this repo. e.g. https://mybinder.org/v2/gh/rocker-org/binder/master?urlpath=rstudio
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hi @cboettig,
I'm sorry for being picky but with the current rocker-org/binder, I get the studio session started in /home/rstudio
while I see the content of https://github.com/rocker-org/binder at the root of the filesystem. Isn't it what you intended to fix?
In any case I find it very confusing, I'd expect that one creates a directory with the name of the repo (in this case, probably /home/binder
, but maybe /binder
is better for some reason), clone the repo inside, and start the rstudio session from there…
Sorry again if this is not relevant. And thanks a lot for your work on this!
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Related Issues (20)
- shiny support via binder. HOT 4
- What other features are missing still? HOT 12
- More elegant solutions to copying repo to container/image...? HOT 3
- Safari browser cannot open Terminal session in RStudio Server HOT 2
- support servr HOT 1
- Base image: moving rocker/binder higher in the stack? HOT 4
- error with DIY deploy from new binder docs HOT 4
- R 3.4.3 not working HOT 1
- Binder + Jupyter Lab + SSL? HOT 6
- why based on geospatial? HOT 7
- images built on `rocker/binder` can't run RStudio on mybinder.org HOT 14
- 404 not found error with jupyterlab HOT 1
- caret and rsample packages HOT 3
- Use of rstudio and joyvan home directories HOT 7
- Site not launching? HOT 2
- 500: Internal Server Error HOT 2
- Run locally on docker failing HOT 1
- rstan or cmdstanr packages don't work HOT 3
- Question: Can we get a `rocker/binder:unstable` image?
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