Comments (3)
cboettig
commented on July 24, 2024
Your install.R file worked just fine with the rocker/binder:3.5.2-based Dockerfile shown above for me. Can you let us know what error you see?
Unrelated but please note that 3.5.2 is pinned to MRAN date of 2019-03-11 https://github.com/rocker-org/rocker-versioned/blob/master/VERSIONS.md; that's not that different than what you have here but note versions are automatically pinned for reproducibility to the R version, your runtime.txt doesn't override that in this Dockerfile.
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flor14
commented on July 24, 2024
Thank you for the answer and explanation about runtime.txt
This is the error:
Error in library(caret): there is no package called ‘caret’
Traceback:
1. library(caret)
2. stop(txt, domain = NA)
Another probably useful information are the package versions (I did not use this code, it is just for the packages versions):
install_version("e1071", "1.6-8")
install_version("gbm", "2.1.3")
install_version("randomForest", "4.6-12")
install_version("xgboost", "0.6.4.1")
install_version("caret", "6.0-78")
install_version("yardstick", "0.0.1")
install_version("tidyverse", "1.2.1")
caret version is not new, not sure if this could be part of the problem:
caret_6.0-78 date 2017-12-10 (https://cran.r-project.org/src/contrib/Archive/caret/)
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cboettig
commented on July 24, 2024
Versions are handled automatically by fixing the R version, which fixes the
MRAN date. Please check the rest of your error log to see what cran repo
the installer is using? I cannot reproduce this error
On Mon, Sep 16, 2019 at 2:14 PM flor14 ***@***.***> wrote:
Thank you for the answer and explanation about runtime.txt
This is the error:
Error in library(caret): there is no package called ‘caret’
Traceback:
1. library(caret)
2. stop(txt, domain = NA)
Another probably useful information are the package versions (I did not
use this code, it is just for the packages versions):
install_version("e1071", "1.6-8")
install_version("gbm", "2.1.3")
install_version("randomForest", "4.6-12")
install_version("xgboost", "0.6.4.1")
install_version("caret", "6.0-78")
install_version("yardstick", "0.0.1")
install_version("tidyverse", "1.2.1")
caret version is not new, not sure if this could be part of the problem:
caret_6.0-78 date 2017-12-10 (
https://cran.r-project.org/src/contrib/Archive/caret/)
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