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followers: 48.0 following: 103.0 repos: 148.0 gists: 9.0

Name: Russell Dinnage

Type: User

Company: Florida International University

Twitter: ecologician

Location: United States

Blog: www.mepheo.science

Russell Dinnage's Projects

mingw-packages

Package scripts for MinGW-w64 targets to build under MSYS2.

modeldescribr

R package with functions used to describe and visualize underlying models from various model objects

nichefillr

R package implementing niche filling simulations

onthefly

R package to help with creating simulation-on-the-fly based likelihood-free inference engines. Based on ideas in https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687905/

pez

Phylogenetics for the Environmental Sciences

pghg-project

Code for project determining how phylogenetic diversity in resource species (phylo-heterogeneity) effects species richness and phylogenetic diversity of consumers. Is is unimodal?

phurl

Phylogenetic modelling Using Regularized Linear models

phy

Tibble format for phylogenetic trees with data designed to support branch regression models in {fibre}

phy_ridge_investigation

Code investigating some properties of phylogenetic ridge regression

phybrr

Fast Phylogenetic Bayesian Random Rates Models for modelling trait evolution (using INLA)

phyf

Tibble subclass and vctrs based phylogenetic data format to support phylogenetic modelling in {fibre}, inspired by {sf}

phylo-nimble-test

Code to begin implementing phylogenetic models in nimble

phylocompetition

Modelling presence/absence data of multiple species, incorporating environment and pairwise competition including phylogenetic structure.

phylodeep

Code for phylogenetic deep learning project, forming the basis of Phylomania2020 talk

phyloflow

Generative Flow Networks for Phylogenetic Inference

phylogenator

Generate a community phylogeny from a species list and a base phylogeny

phylogeny_gan

Code to run a generative adversarial network to generate phylogeny images.

phylomap

R package for phylogenetic stochastic mapping, including a new method that bypasses matrix exponentiation

phylopic-mini

Code to generate phylopic-mini image dataset for phylogenetic and small data machine learning benchmarks

phyr

Collect and update functions about phylogenetic analyses

phyr_ms

Manuscript for phyr

plnt-model

Phylogenetic Latent Niche Trait (PLNT) Model for modeling (and testing?) phylogenetic structure in environmental filtering and competitive interactions simultaneously.

ppdiversify

Code to fit phylogenetic diversification models using a point process along branches

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

proteaceae_deep_learning

Code for playing around with and learning deep learning methods using images of Proteaceae from Australia

pulling_threads

Quarto blog for {fibre} R package

r-personal-utility

Utility functions I use frequently in R

r-system-requirements

System requirements for R packages

ralf

A package providing an interface between R and the Artificial Life Framework (ALF: http://alfsim.org). a software program for simulating complex genome evolution across phylogenies.

rbff

R interface to Boundary First Flattening (BFF) software (https://geometrycollective.github.io/boundary-first-flattening/).

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