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picaflow's Introduction

Presentation of PICAFlow

Full title: PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.

Please consult the https://paul-regnier.fr/tutoriel-picaflow/ webpage to access:

  • Installation instructions
  • A detailed tutorial
  • A test dataset

Feel free to contact me ([email protected] or [email protected]) if you have any question, remark or suggestion about PICAFlow and/or my research work.

Citation

If you used PICAFlow for your analyses, we kindly encourage you to cite our related Application Note published in the Bioinformatics Advances journal:

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picaflow's Issues

FastPG Installation Error

Hey there!

I am attempting installation of the PICAflow software and am getting a recurring error despite performing the troubleshooting/manual installation in your website.

The error occurs at the end of the installation and is:
`In file included from buildNextPhase.cpp:42:
./defs.h:52:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 error generated.
make: *** [buildNextPhase.o] Error 1
ERROR: compilation failed for package ‘FastPG’

That ultimately leads to error:

`ERROR: dependency ‘FastPG’ is not available for package ‘PICAFlow’

  • removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/PICAFlow’
    Warning messages:
    1: In i.p(...) :
    installation of package ‘/var/folders/b1/pcvwjjh51f3gv8pp4jf8ktqh0000gn/T//RtmpCIdgQS/file86ef5954f840/FastPG_0.0.8.tar.gz’ had non-zero exit status
    2: In i.p(...) :
    installation of package ‘/var/folders/b1/pcvwjjh51f3gv8pp4jf8ktqh0000gn/T//RtmpCIdgQS/file86ef67dd0c74/PICAFlow_1.0.tar.gz’ had non-zero exit status`

Any help would be greatly appreciated!
Cheers,
George

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