Related Issues (20)
- empty VCF after running PanGenIe on the pggb assembly HOT 1
- GFA with no P lines HOT 5
- DRB1-3123 example not producing a nice graph anymore after `biwflambda` update. HOT 5
- PGGB use case with hexaploidy genomes HOT 1
- force reference output in VCF HOT 2
- Three chromosome take too long time HOT 16
- High heterogeneity in sequences identity HOT 2
- extracting node path-coverage information HOT 3
- wfmash -Y option HOT 3
- About the result study HOT 4
- Question about the example "scerevisiae7.fasta.gz " HOT 1
- ValueError: too many values to unpack (expected 13) HOT 3
- Get the fasta file of non reference sequence
- [W::vcf_parse] Contig '2' is not defined in the header. (Quick workaround: index the file with tabix.) HOT 4
- PGGB get the fasta file of non reference sequence
- Building a graph from fragmented assemblies
- interoperability with vg - error:[vg::SmallSnarlSimplifier] Invalid graph on iteration 0 HOT 14
- Current Bioconda release does not find python scripts HOT 7
- Possible community detection bug HOT 5
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from pggb.