pangenome Goto Github PK

abpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

burng

Removing complex regions from pangenome graphs

chm13-grch38-liftover

liftover from the CHM13 T2T assembly to GRCh38 using wfmash

chromosome_communities

Recombination between heterologous human acrocentric chromosomes

computational-pangenomics-2020

Online Training Course on the use of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.

cpang20

computational pangenomics course 2020 edition

flubble

finding single-entry single-exit bubbles in the flowgraph

gavlooth.github.io

Privacy pangenomics web page

gbwt-wrapper

Exposes C api for the gbwt library

gfa-wp

Convert GFA W-lines to P-lines

gfa-wrapper

Wrapper aroung rs-gfa that exposes C api

gfaestus

GFA visualizer, GPU-accelerated using Vulkan

gfagino

your friendly pangenome graph genotyper

gfalace

lace up GFA files using panSN path name sub-ranges to coordinate the lacing

hprcy1

pangenome build for HPRC year 1 samples

hprcy1v2

pangenome build for human pangenome project year 1 genomes (version 2 assemblies)

hprcyear1v2genbank

building a human pangenome from the HPRCy1v2 genbank accessioned assemblies

impg

implicit pangenome graph

jbrowse-visualization

Workflow to visualize pggb graphs in jbrowse

keane_mouse_pangenome

lifetree

hard mode all genomes alignment

mafchunk

split MAF blocks into smaller chunks

maffer

extract MSAs from genome variation graphs

mempang23

Computational Pangenomics in Memphis

mempang24

Computational Pangenomics in Memphis

mempang25

Computational Pangenomics in Memphis

mhc

exploring the MHC in the HPRC year 1 samples

odgi

Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

odgi-paper

ODGI: understanding pangenome graphs (https://doi.org/10.1093/bioinformatics/btac308)