Scalable De Novo Isoform Discovery

IsoSeq contains the newest tools to identify transcripts in PacBio single-molecule sequencing data. Starting in SMRT Link v6.0.0, those tools power the IsoSeq GUI-based analysis application. A composable workflow of existing tools and algorithms, combined with new clustering techniques, allows to process the ever-increasing yield of PacBio machines. Starting with version 3.4, support for UMI and cell barcode based deduplication has been added. Version 4.0 adds a new cluster2 tool that enables clustering of hundreds of millions of HiFi reads.

The binary has been renamed from isoseq3 to isoseq to enable major version changes. Bioconda will still generate a isoseq3 softlink. The old bioconda isoseq3 package will automatically install the latest isoseq package.

Latest version can be installed via bioconda package isoseq.

Please refer to our official pbbioconda page for information on Installation, Support, License, Copyright, and Disclaimer.

• Visit isoseq.how for the latest documentation

THIS WEBSITE AND CONTENT AND ALL SITE-RELATED SERVICES, INCLUDING ANY DATA, ARE PROVIDED "AS IS," WITH ALL FAULTS, WITH NO REPRESENTATIONS OR WARRANTIES OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, SATISFACTORY QUALITY, NON-INFRINGEMENT OR FITNESS FOR A PARTICULAR PURPOSE. YOU ASSUME TOTAL RESPONSIBILITY AND RISK FOR YOUR USE OF THIS SITE, ALL SITE-RELATED SERVICES, AND ANY THIRD PARTY WEBSITES OR APPLICATIONS. NO ORAL OR WRITTEN INFORMATION OR ADVICE SHALL CREATE A WARRANTY OF ANY KIND. ANY REFERENCES TO SPECIFIC PRODUCTS OR SERVICES ON THE WEBSITES DO NOT CONSTITUTE OR IMPLY A RECOMMENDATION OR ENDORSEMENT BY PACIFIC BIOSCIENCES.