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aihmm

This is a program for discovering meaningful patterns of allelic imbalance (also known as allelic expression) from high throughput genotyping sets. More details see: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2900287/

allelic-imbalance-analysis

apollo

Unofficial repo for software vendoring or packaging purposes

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

awesome-public-datasets

A topic-centric list of HQ open datasets.

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

bayexer

A Demultiplexing Tool for Illumina Sequencers

bda_py_demos

Bayesian Data Analysis demos for Python

bda_r_demos

Bayesian Data Analysis demos for R

books

技术书籍等

chia-pet2

a versatile and flexible pipeline for analysing different variants of ChIA-PET data

circosideogram

Make Circos style Ideogram plot of point genomic data with few features.

cowplot

cytoscape

Cytoscape: an open source platform for network analysis and visualization

d3heatmap

A D3.js-based heatmap htmlwidget for R

debby

A demo implementation of Succinct de Bruijn Graphs.

dropest

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

exonchipprocessing

gcn

Implementation of Graph Convolutional Networks in TensorFlow

genetics

ggbio

Grid and ggplot2 based visualization for biological data

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

industry-machine-learning

A curated list of applied machine learning and data science notebooks and libraries across different industries.

keras

Deep Learning for humans

lastz

code for working with lastz alignments

learnbayes

Functions for Learning Bayesian Inference

mango

chia pet analysis software

mci-subtype

Subtyping of mild cognitive impairment