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Appveyor build status (Windows x86 and x64)

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EarTrack

An imaging library to detect and track future position of ear on maize plants.

EarTrack is released under a Cecill-C license.

Documentation

The documentation is available at https://eartrack.readthedocs.io

Tutorials are available as Jupyter notebook :

Installation with Miniconda

Miniconda installation

Follow official website instruction to install miniconda : http://conda.pydata.org/miniconda.html

To create conda environment and activate it :

conda create -n eartrack python=2.7
source activate eartrack # just "activate eartrack" on windows

User installation

Available for linux, Windows and Mac OSX on 64 bits.

conda install -c conda-forge -c openalea openalea.eartrack

Source code installation

Please follow documentation installation page <https://eartrack.readthedocs .io/en/latest/source/install/index.html>.

Help and Support

Please open an Issue if you need support or that you run into any error (Installation, Runtime, etc.). We'll try to resolve it as soon as possible.

Citation

Brichet N, Fournier C, Turc O, Strauss O, Artzet S, Pradal C, Welcker C, Tardieu F, Cabrera-Bosquet L. 2017. A robot-assisted imaging pipeline for tracking the growths of maize ear and silks in a high-throughput phenotyping platform. Plant Methods 13:96 doi:10.1186/s13007-017-0246-7

Authors

eartrack's People

Contributors

artzet-s avatar brichet avatar pradal avatar

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eartrack's Issues

Conda packaging

Add a conda package.
Upload the conda package on openalea channel

Missing docstrings

On the reference documentation there are missing docstrings. Either exclude these functions or add adoc string (the latter action is recommended ;) )

In binarisation (http://eartrack.readthedocs.io/en/latest/source/references/binarisation.html):

  • meanshift_hsv
  • color_tree
  • color_threshold_tree_cabin_1
    NB: you can alias the last function with a better name

In eartrack, everything is documented. Congrat!!!
However, you can improve and homogeneize the docstring:

  • This function analyses -> Analyse (Remove This function when possible)
  • Recall for doc string: A first line as a summary. Then blank line. Then detail description of what the function do.
    Modify get_view_angles

Add unit tests

There is currently only a large test.
There is a need to add small unit test to test each function independantly.
This can be linked to issue #4

Enhance command line eartrack

I think that OptParse is more enhanced than argparse.
What I propose is to replace (in main.py) argparse by OptParse
(see vclimb.py)
Then, I recommend to add a function main.py which will be called at command execution.

@brichet: What do you think about it?

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