R package error about lola HOT 4 OPEN

I get the same error, have you solved it?

from lola.

This is not an error in LOLA, it's an issue with the data you are using. In other words, the question you are asking of LOLA doesn't really make sense.

You should look carefully at your universe and how good of a fit it is for your query set. You seem to have a universe and user set that are not really similar. The algorithm used by LOLA expects that your universe is a representation of all possible regions that could have been in your universe. This expection is not satisfied in your data.

There are several ways you could address this. One option is to use the redefineUserSets() function (or the redefineUserSets argument to runLOLA) to redefine your user sets. But you should look into the results to make sure this is what you want. Another option is to change your universe to make it a better representation of your query regions.

from lola.

Thanks. I will check my universe to find the problems.

from lola.

Hi Nathan,

I would like to highlight that in your paper named "Nonstationary Evolution and Compositional Heterogeneity in Beetle
Mitochondrial Phylogenomics" you had plotted p4 results saying it groups according to the AT%. When I tried to run p4 with the dataset which you had included in the supplementary, It didn't group and the result obtained was different when I plotted for the same. It would be really helpful if you can give me a clarification. Maybe I missed something unlike you while p4 run. Could you please give a look and respond.

from lola.