nsheff Goto Github PK
Name: Nathan Sheffield
Type: User
Company: University of Virginia
Bio: Associate professor and leader of @databio computational biology research group.
Location: VA
Blog: https://www.databio.org
Nathan Sheffield's Projects
autotest
batchtools
Tools for computation on batch systems
bioc8145
BIOC 8145 provides the statistical and programming background as well as introduction to software tools that enable analysis of functional genomics data sets.
cphg-welcome
A list of tools to make computing at CPHG easier
cumulative-distribution-transform
Cumulative Distribution Transform
cwriter
C++ functions for writing large vectors from R
dippeak
Kernel density estimator for DNase data.
docker
Dockerfiles for R development, jekyll serving, graphics, etc.
env
Linux environment files
fermikit
De novo assembly based variant calling pipeline for Illumina short reads
gitignore
A collection of useful .gitignore templates
irangekernels
Extends IRanges by adding kernel multiplication to Views objects
lola
Locus Overlap Analysis: Enrichment of Genomic Ranges
mediabuilder_leftovers
newgrant
pandoc-wrapfig
A simple pandoc filter that facilitates using the wrapfig package.
rgenie
scholdoc-examples
Examples of documents written in ScholarlyMarkdown and converted with Scholdoc
targets
User manual of the targets R pacakge
testlmod
user_guide
The CWL v1.0 user guide
yacman2
YAML configuration manager
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