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prometheus-feedstock

A conda-smithy repository for prometheus.

pyd4

The python binding for D4 format

pyhocon-feedstock

A conda-smithy repository for pyhocon.

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

pyvcf

A Variant Call Format reader for Python.

quickstart-illumina-dragen

AWS Quick Start Team

quickstart-qumulo-cloud-q

AWS Quick Start Team

read-structure-examples

Example Read Structures for BAM <-> FASTQ

riboseqc

Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.

rsem

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-bio-types

A library of common biomedical types.

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

rust-pseudoaligner

Single-Cell RNA-seq pseudo-aligner

samblaster

samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.

samtools

samwell

Samwell: a python package for using genomic files... well

sbt-coveralls

Sbt plugin for uploading Scala code coverage to coveralls

scala-json-doclet

sga

experimental de novo sequence assembler using string graphs

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-pytest

Snakemake with pytest example

snakeparse

Making Snakemake workflows into full-fledged command line tools since 1999.

snakeskin

Making snakemake wrappers cool again

snpeff

somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

spoa

SIMD partial order alignment tool/library

squid

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

srma

Short-read Micro-Aligner

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks