Nils Homer's Projects
A conda-smithy repository for conda-env-builder.
A conda-smithy repository for conda-forge-pinning.
Coronavirus (SARS-Cov-2) sequencing analysis
Python Workflow and Pipeline Management System
The Python programming language
Reference-based compression of SRA data
Scripts used to discover and quantify non-annotated cryptic splicing in RNA-seq data
Artisanal š¤£ bioinformatics tools and pipelines in Scala
cython + htslib == fast VCF and BCF processing
A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
A conda-smithy repository for defopt.
Genetic multiplexing of barcoded single cell RNA-seq
Digenome software
Whole Genome Simulator for Next-Generation Sequencing
DNAnexus platform client libraries
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
A Python library for interacting with ENA's API
Solutions to http://projecteuler.net
A tool for estimating repeat sizes
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Standalone C library for assembling Illumina short reads in small regions
Command-line Tools to Identify Primers in high throughput sequencing data
Tools for working with genomic and high throughput sequencing data.
Large File Support Testing for Mac OS X Lion
Bayesian haplotype-based polymorphism discovery and genotyping.
GATK Official Release Repository