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advntr

A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

aimsetfinder

AIMsetfinder is a collection of Rscripts to identify sets of Ancestry Informative Markers (AIMs), that minimize the logloss error of a naive Bayes classifier.

airflow

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

amazon-ebs-autoscale

Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.

aoc_2021_rs

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome_bioinformatics_consultants

badges

:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yourse!

bamtools

C++ API & command-line toolkit for working with BAM data

basespace-commons

Library for use in BaseSpace apps.

basespace-invaders

A collection of tools to work with Illumina's basespace

basespace-python-sdk

BaseSpace Python SDK

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

bfast

BFAST: the Blat-like Fast Accurate Search Tool

bfx-examples

Bioinformatics Example Repository

bfx-qc-reporter

Bioinformatics QC Reporting Tools

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

biofast

Benchmarking programming languages/implementations for common tasks in Bioinformatics

bioinformatic-worfklow-idioms

Common idioms and their implementation across Bioinformatic workflow languages

biopython

Official git repository for Biopython (originally converted from CVS)

bullet-python-feedstock

A conda-smithy repository for bullet-python.

bwa

Burrow-Wheeler Aligner

bwa-meme

bwapy

Python bindings to bwa mem

calitas

callerpp

A simple consensus caller based on partial order alignment with spoa

cgranges

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

circe

Yet another JSON library for Scala