munterfi / ertg3d Goto Github PK

By updating to RoxyGen 6.1 also the hidden functions are getting documented.
Use NoRd to avoid documentation for the dot-functions

Hi @nnneogeorge @munterfinger! I stumbled upon this paper which led me to this repository.

Does eRTG3D have a way to generate 2D trajectories? I couldn't find any mention of this in the documentation, but i figured it was worth a shot after reading this part:

The development started from a 2-D version of the eRTG algorithm by Technitis et al. (2016).

Thank you for your time!

Use the internal R function (nclass.FD) for estimating the number of bins in the stepTurnLift histogram. Thereby the previous implantation of the Freedman–Diaconis rule .fd.bw will be removed.

Extend the parallel calculation capacities of the functions n.sim.cond.3d(), qProb.3d() and n.sim.gliding.soaring.3d() such that they also run in parallel on Windows systems. At the moment only unix-based systems are supported.

Write roxygen example for every function that is running and illsutrates the capabilites

Add the following citation to the eRTG3D package:
Unterfinger, M., 2018. 3-D Trajectory Simulation in Movement Ecology: Conditional Empirical Random Walk. Master's thesis. University of Zurich.

citation("eRTG3D")

Add package import :: statement for the stats and utils packages. It is not throwing an ERROR in the R CMD check but a NOTE.

Avoid the 3 Notes in R CMD check --as-cran:

• checking R code for possible problems ... NOTE
  no visible binding for global variable
• checking installed package size ... NOTE
  dem
• checking top-level files ... NOTE
  LICENSE and eRTG3D.pdf

Ensure that passing in a trajectory as input where the z dimension is 0 or constant, no error occurs and the algorithm worsks properly. The 2-D case should also be handled in a 3-D algorithm.

To Do:
-Eliminate minimum Number of bins
-Adjust the tld-Cube
-Check result and ensure all other functions (testing, plotting, ... ) are still working.

Create a github page for the eRTG3D package before submission to CRAN.
The pkgdown package should be used to be consistent with other packages.

• Do not use more than 2 cores in examples or tests. With
  nCores <- parallel::detectCores()-1
  you will detect many cores on our machine ...

Implement glidingSoaring3d() also for windows.

• Add an URL of the master thesis in your Description text in the form
  http:... or https:...
  with angle brackets for auto-linking and no space after 'http:' and 'https:'.

Write the DOI in your Description text in the form
doi:10.5167/uzh-130652.

• Replace cat() by message() or warning() in functions (messages and warnings can be suppressed if needed).

Adjust 3D plotting functions (plot3d, plot3d.tldCube) to the new version (4.8.0) of plotly. Now the color of markers and lines has to be set individually.