Comments (1)
My own use case is basically just using Genbank/GFF/Bed format files as input. Therefore, I cannot provide many examples using CSV/TSV/JSON files as input as you request.
Also, I do not plan to include examples with external files such as CSV/TSV/JSON as input in future documents for the following reasons.
- It would be tedious to explain the contents and format of external files.
- Using external files makes it troublesome to write documentation in jupyter notebook alone
- I would like to keep the style of the documentation to simply explain the functionality of the pyCirclize API.
(Including the preprocessing code for external files would make the documentation complicated)
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Related Issues (20)
- Custom colors for each feature HOT 2
- Phylogenetic leaf labels with spaces are truncated HOT 2
- Arrows HOT 2
- Some modifications in my link circos HOT 9
- Is there a way to plot shapes on tracks? HOT 5
- Issue with ZeroDivisionError in Circos Plot HOT 2
- Is there any way to integrate between heatmap data and tree leaves? HOT 3
- Confused with bar plot HOT 2
- Enable wrapping/bending the text around a circle HOT 1
- Track Heatmap cmap Customization HOT 2
- cannot import name 'SimpleLocation' from 'Bio.SeqFeature' HOT 1
- figuresize HOT 1
- Massive size on save to svg - vectors of sector borders and some other lines have tons of nodes HOT 1
- Doubt regarding pycircilize HOT 3
- How to use vmin argument in `track.line()` method HOT 1
- Question: Linear tree visualization HOT 2
- Highlight different gene functioins with different tick/label colors and jitter labels HOT 1
- Custom color for genomic features HOT 2
- Set different axis scales in the radar chart HOT 5
- how to adjust overlap label by bend line like circlize HOT 1
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