Currently, A docker version is available at dockerhub cytosee, you can also edit and build your own image with cytosee Dockerfile
install.package("devtools")
source("http://bioconductor.org/biocLite.R")
biocLite(c('FlowSOM','flowMeans','SamSPECTRAL'),ask=FALSE)
devtools::install_github('madlogos/recharts')
devtools::install_github('mingchen-lab/cytosee')
Rtool34 or higher version is needed depended on the R version. Download address: https://www.r-project.org/
install.package("devtools")
source("http://bioconductor.org/biocLite.R")
biocLite(c('FlowSOM','flowMeans','SamSPECTRAL'),ask=FALSE)
devtools::install_github('madlogos/recharts')
devtools::install_github('mingchen-lab/cytosee')
# CytoSEE start with one command in your IDE(R/Rstudio)
library("cytosee")
cytosee_gui()
We have integrate FIt-SNE into CytoSEE to deal with dimention reduction of large cell counts. To enable this function, FIt-SNE should be avaliable in your environment.