plotmygbk's People
plotmygbk's Issues
TypeError on step and window
When you run "the complete use"
python plotMyGBK.py -f mygenbank.gbk -C Y -F Y -w 3000 -s 1500 -t 16
plotMyGBK.py do not transform the values to integer.
Just replace the lines 448-450 with this
window = int(options.window)
step = int(options.step)
threads = int(options.threads)
Enzo.
AttributeError: Values instance has no attribute 'cogoption'
Hi S.!
I'm trying to run the script on the putida.gbk example (avalaible in this repository) but I'm getting this error
Traceback (most recent call last):
File "plotMyGBK.py", line 479, in <module>
main()
File "plotMyGBK.py", line 445, in main
makecog = options.cogoption
AttributeError: Values instance has no attribute 'cogoption'
I have Python v2.7.14, R v3.2.2
Also the folder for classify genes by function (on dropbox) is not available. I don't know if I need it for the script to work.
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