Comments (7)
Please use use the "ng" branch. It will be pushed to main any day now. I will also add a tutorial and documentation to the README. For now, please use https://hackmd.io/asojhSf-T8GOJOr9HQj_IA#Panacus for orientation. Since the file format changed a lot in this new version, I think your question will no longer be valid. If you have any questions, please post here.
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How can I download Panacus? I couldn't find a download link on your latest webpage https://hackmd.io/asojhSf-T8GOJOr9HQj_IA#Panacus
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At the moment, you can only download the source (make sure you're on the "ng" branch!) and then compile it yourself (cargo build --release
). I'll make it soon (~2 weeks) available through conda
.
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Sorry to bother you again. I don't understand what the "ng" branch means. I was able to install pangenome-growth0.1 using the recommended command "cargo build --release" and successfully run it on animals pangenome. In your tutorial notes, you mentioned that it's already available on the course workstations, but I don't have access to those workstations.
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Sorry, it's git checkout ng && git pull origin ng
.
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New version is now in main
and finally released (including pre-compiled executables). I'm closing this issue now.
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Related Issues (20)
- could you give us an example of cactus? HOT 7
- Installation instructions HOT 2
- Merge different chroms stats into one graph HOT 3
- path coordinates HOT 8
- After `panacus hist` and `panacus growth`, the final visualization will show `#nodes` instead of `bps`. I use `-c bp` for hist HOT 1
- Option to output plots in separate PNG files HOT 11
- Could you please make an new release? HOT 3
- command is not supported for more than 65534 HOT 6
- How to Visualize the results of the minigraph-cactus? HOT 21
- Request software updates HOT 6
- Feature request: Alternative plot with #nodes/#edges vs AC
- A problem while running panacus-visualize HOT 1
- Update Readme to reflect installation of python dependencies in the installation section. HOT 1
- compiler error in rustc-serialize HOT 3
- Haplotype labels in TSV, visualisations ? HOT 8
- panacus-visualize.py is overwhelmed by 1000 haplotypes HOT 10
- how is panacus treating Ns HOT 4
- Discrepancy between graph length, reference length, and novel base pairs HOT 3
- macOS binary missing HOT 1
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