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danydoerr avatar danydoerr commented on July 4, 2024

Please use use the "ng" branch. It will be pushed to main any day now. I will also add a tutorial and documentation to the README. For now, please use https://hackmd.io/asojhSf-T8GOJOr9HQj_IA#Panacus for orientation. Since the file format changed a lot in this new version, I think your question will no longer be valid. If you have any questions, please post here.

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1538501175 avatar 1538501175 commented on July 4, 2024

How can I download Panacus? I couldn't find a download link on your latest webpage https://hackmd.io/asojhSf-T8GOJOr9HQj_IA#Panacus

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danydoerr avatar danydoerr commented on July 4, 2024

At the moment, you can only download the source (make sure you're on the "ng" branch!) and then compile it yourself (cargo build --release). I'll make it soon (~2 weeks) available through conda.

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1538501175 avatar 1538501175 commented on July 4, 2024

Sorry to bother you again. I don't understand what the "ng" branch means. I was able to install pangenome-growth0.1 using the recommended command "cargo build --release" and successfully run it on animals pangenome. In your tutorial notes, you mentioned that it's already available on the course workstations, but I don't have access to those workstations.

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danydoerr avatar danydoerr commented on July 4, 2024

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danydoerr avatar danydoerr commented on July 4, 2024

Sorry, it's git checkout ng && git pull origin ng.

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danydoerr avatar danydoerr commented on July 4, 2024

New version is now in main and finally released (including pre-compiled executables). I'm closing this issue now.

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