Comments (2)
From [email protected] on April 18, 2012 09:30:28
You can already do that from your shell by redirecting the standard output with ">". This should work:
cutadapt ... -o output.fastq input.fastq > logfile.txt
If you donβt use the -o parameter, this will work:
cutadapt ... input.fastq > output.fastq 2> logfile.txt
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From [email protected] on May 12, 2012 15:13:29
Status: WontFix
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Related Issues (20)
- NextSeq Quality Trimming Issue HOT 3
- When demultiplexing, report contains irrelevant line
- Use `--action=lowercase` for short reads but keep trimmed passed reads. HOT 2
- Error in file.py, "OutStream" object does not have attribute 'buffer' HOT 3
- Output of demultiplexing mixed oriented reads HOT 5
- Need help in using cutadapt to trim paired-end fastq reads to provide as input for DADA2 HOT 4
- Questions about trimming when both -g and -a options are present HOT 3
- Cutadapt writes some errors to STDOUT instead of STDERR HOT 6
- Vectorize alignment algorithm for x86-64 HOT 1
- Installing via FreeBSD ports and pkgsrc HOT 3
- FYI: Macos-14 runners available for M1 macs. HOT 2
- Reads not trimmed for PE with poly-G HOT 5
- Cutadapt 4.7 hangs when using process substitution HOT 10
- Crash on sending interleaved output to stdout
- cutadapt cannot read from stdin with xopen 2.0.0 HOT 3
- Feature request: Support for multiple FastQ pairs
- Ensuring to find the correct file after Demultiplexing my 16S amplicon raw dataset with combinatorial dual indexes cutadapt command HOT 5
- Pipe multiple adatper trimming steps is unsupported when using the python API. HOT 5
- Error: BiocParallel errors HOT 5
- Remove the "Incomplete adapter sequence" warning
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