Comments (4)
akspat
commented on August 27, 2024
1
Thank you very much. It was really helpful.
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marcelm
commented on August 27, 2024
Hi, I’ll try to answer more fully later when I have more time, but please have a look at this section in the documentation for now.
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akspat
commented on August 27, 2024
Okay, Thank you.
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marcelm
commented on August 27, 2024
I think the section in the documentation should work for your case. Let me know if that did not help you enough.
Regarding the Illumina adapters: You can ignore these because you the Illumina adapters would come after the primer sequences. Since you search for the primer already, the adapter (coming after it), gets also removed when the primer is removed.
Regarding the 300 samples, I just added a section to the documentation about this:
https://cutadapt.readthedocs.io/en/latest/recipes.html#many-samples
Let me know if that is helpful; I’d be happy to explain more if necessary.
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Related Issues (20)
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