Codes for the data analysis in the human placenta paper.Major content includes:
- STARmap data preprocessing and analysis
- STARmap cell segmentation and label transfer from reference single-cell data
- Imputation of whole transciptome data for STARmap cells
- Preprocessing, clustering, and downstream analysis of 10X multiome data
- Chromatin potential of 10X multiome data
The manuscript is under preparation and will be out soon.
Kang Jin, Koseki J. Kobayashi-Kirschvink, Andrew Russell, Andreas Lackner, Johain Ounadjela