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bering

GCN-based Segmentation Method for single-cell spatial transcriptomics data

celldrift

CellDrift: temporal perturbation effects for single cell data

celldrift_analysis

Code for analysis in the CellDrift paper

clustermap

ClusterMap for multi-scale clustering analysis of spatial gene expression

covid-19-atlas

Re-analyze public COVID-19 single-cell RNA-seq data

greenpepper

hplacenta-architecture

kang-bioinfo.github.io

nrxn1_effects

codes for single-cell analysis of NRXN1_del effects in human brain organoids

pytorch_geometric

Graph Neural Network Library for PyTorch

scrna-seq_hepatoblastoma

Analysis of single-nuclei RNA-sequencing data of Hepatoblastoma

sctriangulate

scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions

test_git

I want to use this repo to understand some operations of git

toppcellpy

ToppCell (https://toppcell.cchmc.org/) is a web portal designed for biologists and bioinformaticians to explore single-cell RNA-seq data swiftly in the era of single cell and high throughput sequencing. Now we enable the visualization function using Python, making it flexible and standalone. It's still improving and your suggestions are really appreciated.